PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 253aa    MW: 27365.7 Da    PI: 9.7596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-1597141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+Wk I+r + k+Rt+ q+ s+ qky
   XP_010539946.1  97 PWTEEEHKLFLLGLQKVGKGDWKGISRNFVKTRTPTQVASHAQKY 141
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.95190146IPR017930Myb domain
SuperFamilySSF466891.15E-1792147IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1793144IPR006447Myb domain, plants
SMARTSM007171.0E-994144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1197141IPR009057Homeodomain-like
CDDcd001675.71E-1097142No hitNo description
PfamPF002491.1E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAGSSSSSE TGGGGVRKEI MLFGVRVVVD PMRKCVSLNN LSEYEQPEEI PKKIGGGDGD  60
GEGKNKADFA VGYASADEAV PISSSSGGNR ERKRGIPWTE EEHKLFLLGL QKVGKGDWKG  120
ISRNFVKTRT PTQVASHAQK YFLRRSNFNR RRRRSSLFDI TTETVTGMAM EEDHVQVSHP  180
KDTQPNFVHL VSSTLQAPSG FNLNPAVNSS PLSLSLSLAA PCPKDQQSAN CSAFRTTMPS  240
FSSRDSNSVI GVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539946.10.0PREDICTED: transcription factor MYB1R1-like isoform X1
RefseqXP_010539947.10.0PREDICTED: transcription factor MYB1R1-like isoform X2
SwissprotQ2V9B01e-58MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLE4MX294e-89E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16
TrEMBLV4KXY14e-89V4KXY1_EUTSA; Uncharacterized protein
STRINGAT1G19000.13e-85(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.27e-63MYB_related family protein